FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | lane3_Index13_1.fq |
| File type | Conventional base calls |
| Encoding | Illumina 1.5 |
| Total Sequences | 20349123 |
| Filtered Sequences | 0 |
| Sequence length | 90 |
| %GC | 49 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCTGG | 4268965 | 2.5688841 | 5.8155746 | 1 |
| CTTCT | 4387615 | 2.521756 | 5.265941 | 1 |
| GAAGA | 4312050 | 2.519879 | 5.149145 | 2 |
| AAGAA | 4350525 | 2.4953103 | 5.167782 | 2 |
| CTGGA | 4072905 | 2.4100876 | 8.332636 | 1 |
| TCCAG | 3957630 | 2.3374593 | 5.103059 | 2 |
| CTCCT | 3922480 | 2.3024454 | 6.5695972 | 1 |
| CTGGG | 3702445 | 2.2321851 | 7.916328 | 1 |
| CAGGA | 3733280 | 2.2186043 | 5.399323 | 1 |
| CTTCA | 3805435 | 2.1965418 | 5.5109386 | 1 |
| CTCCA | 3660170 | 2.1576972 | 7.0482435 | 1 |
| CCCAG | 3562190 | 2.1487212 | 6.532195 | 1 |
| CAGAA | 3535230 | 2.062025 | 5.02515 | 1 |
| CTCTG | 3409205 | 2.00494 | 5.914937 | 1 |
| CTGGC | 3141355 | 1.8903356 | 5.065579 | 1 |
| TGGAA | 3159560 | 1.8384924 | 5.139641 | 2 |
| CTGAA | 3138670 | 1.822893 | 5.191638 | 1 |
| CTCAG | 2924420 | 1.7272239 | 5.8634634 | 1 |
| CTTGG | 2762655 | 1.6277758 | 5.293075 | 1 |